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Complete Bioinformatics Notes

Complete set of Bioinformatics Notes Content: - Annotating sequences, Global/ Pairwise alignments, BLAST output, Substitution/ PAM/ BLOSUM matrix, Log odds, Deriving Matrix scores - Focussed Scoring Methods - PSSM, Pseudocounts, Protein domains and Functional sites, MSA ClustalO Output, PROSITE...

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Bioinformatics Lecture 3 Notes

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Bioinformatics module Lecture 3 For a Second year student studying a Biochemistry/Biotechnology degree Content - Hidden Markov Models – HMM - Protein Structure Prediction - Intro to Secondary Structure Prediction - Jpred Algorithm - 2 types of networks (Sequence to structure, Structu...

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Bioinformatics Lecture 4 Notes

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Bioinformatics Lecture 4 Notes Second year student studying for a Biochemistry/Biotechnology degree Content - Fold prediction - Prediction by Homology - Phyre - Phylogenetic trees - Tree building programs: Distance based method, Bootstrapping, Maximum Parsimony.

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Bioinformatics Lecture 2 Notes

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Bioinformatics Lecture 2 Notes Second year student studying for a Biochemistry/Biotechnology degree Content - Focussed Scoring Methods - Position-Specific Scoring Matrices (PSSM) including examples of matrices & using PSSM with PSI-BLAST - Pseudocounts - Protein domains and Functional site...

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Bioinformatics Lecture 1 Notes

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Bioinformatics Lecture 1 Notes Second year student studying for a Biochemistry/Biotechnology degree Content: - Introduction to the course - Annotating sequences - Global/ Pairwise alignments - BLAST output - Substitution/ PAM/ BLOSUM matrix - Log odds - Deriving Matrix scores - Simpl...

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